The Organization was created by a god/alien race known as The Architects of Life.
It is run by 9 sub leaders who are known as Proctors and they were made to govern the first planet made by The Architects of Life called Wa.
There humans were made and animals and other life forms, The Organization were then sent down from space to build their HQ and govern Wa, their technology is incredibly futuristic and each Proctor has a division they work in within The Organization.
Soon a virus/parasite infected the leader of The Architects and Wa was ultimately abandoned as after a massive supernatural pandemic decimated it.
The Architects of Life soon broke apart and those who weren't infected by the parasite hid their treasured artifact; The Galaxy Cube
The Organization and the leader of The Architects; Mr. V all left to make another planet they called Earth, there they governed it but this time in secret, their real agenda was to find The Galaxy Cube and use it to rule the world their own way.
Mr. V was hellbent on finding it, no matter the cost. However in order to find it he had to find another device they made called The Cube, which could be used to locate The Galaxy Cube.
Now The Organizations HQ is based off in New York City hidden in plain site where they work.
The Organization also has various types of elite soldiers who protect the HQ and The Organization
There are also a group called Agents who work solely under Mr. V.